Proteomics Research

Study protein expression, enzyme functions, and proteomic changes in organisms exposed to spaceflight conditions.

19 Publications
NASA Repository

More Proteomics Publications

18 publications

Proteomic and phosphoproteomic characterization of cardiovascular tissues after long term exposure to simulated space radiation

A study on mice exposed to simulated galactic cosmic rays (GCR) reveals long-term changes in heart and plasma proteins 8 months post-exposure. A key finding is the activation of pathways leading to Neutrophil Extracellular Traps (NETs) in heart tissue, a process linked to inflammation, tissue damage, and thrombosis, highlighting a significant cardiovascular risk for long-duration space missions.

Identification of a novel Golgi-localized putative glycosyltransferase protein in Arabidopsis thaliana

Researchers have identified and localized a new protein, AtGTLP, in the model plant Arabidopsis thaliana. This protein resides in the trans-Golgi apparatus and is predicted to be a glycosyltransferase, an enzyme critical for cell wall biosynthesis and protein modification, providing foundational knowledge for plant-based life support systems in space.

Tardigrade Survival Secrets: Unraveling the Role of Antioxidants in Desiccation Tolerance

This study demonstrates that desiccation significantly increases harmful reactive oxygen species (ROS) in tardigrades. Using RNA interference, researchers identified that the antioxidant enzyme glutathione peroxidase is essential for survival, while other enzymes and aquaporin proteins are crucial for successful rehydration, highlighting a complex, synergistic defense mechanism.

Prolonged Exposure to Microgravity Reduces Cardiac Contractility and Initiates Remodeling in Drosophila

Fruit flies born and raised on the ISS showed significant cardiac dysfunction, including reduced contractility and output. This study reveals that microgravity triggers extensive cardiac remodeling, downregulates structural genes, and dramatically upregulates genes for protein degradation, indicating a state of 'proteostatic stress' that may be a fundamental response of heart muscle to spaceflight.

Multi-omics Analysis of Multiple Missions to Space Reveal a Theme of Lipid Dysregulation in Mouse Liver

A comprehensive analysis of liver tissue from mice on multiple space missions reveals that spaceflight consistently disrupts lipid metabolism. These changes, driven by key regulators like HNF4α and PPARα, resemble the early stages of non-alcoholic fatty liver disease (NAFLD), highlighting a potential health risk for long-duration space travel.

Multi-omics analysis of multiple missions to space reveal a theme of lipid dysregulation in mouse liver

Multi-mission analysis of mice flown on the ISS reveals that spaceflight alone, independent of re-entry stress, causes significant lipid accumulation in the liver. This dysregulation, confirmed through transcriptomics and proteomics, points to early signs of non-alcoholic fatty liver disease (NAFLD), highlighting a potential health risk for astronauts on long-duration missions.

High-Dose Ionizing Radiation Weakens Bone by Fragmenting Collagen, Not by Crosslinking

An ex vivo study on mouse vertebrae reveals that high-dose ionizing radiation (≥5,000 Gy) significantly reduces bone strength and fatigue life by causing collagen fragmentation. Increased collagen crosslinking, observed even at low doses, did not correlate with mechanical weakness, clarifying a key mechanism of radiation damage to bone.

GeneLab Analysis Reveals a Protective FYN-Mediated Response to Space Radiation in the Cardiovascular System

Analysis of GeneLab data from ground and spaceflight experiments suggests a novel protective mechanism where space radiation activates the FYN kinase, which in turn reduces harmful reactive oxygen species (ROS) in cardiovascular cells. This finding, which identifies protons as the dominant radiation source in LEO, is critical for modeling long-term astronaut heart health and developing targeted countermeasures.

FAIRness and Usability Assessment of NASA's GeneLab and Other Open-access Omics Data Systems

An evaluation of NASA's GeneLab and four other omics data systems against 14 FAIR principles (Findability, Accessibility, Interoperability, Reusability) revealed strong performance in data accessibility but significant shortcomings in interoperability. The study highlights the need for improved semantic standards to enhance data integration and reuse, a critical goal for accelerating space bioscience research.

Endoplasmic Reticulum: A Central Hub for Plant Stress Sensing and Response

This review synthesizes current knowledge on the plant endoplasmic reticulum (ER), highlighting its critical role as a sensor and mediator of cellular stress. By managing protein quality, initiating signaling pathways, and influencing cell fate, the ER is fundamental to plant adaptation, with major implications for developing resilient crops for space missions.

Microgravity Induces Pelvic Bone Loss through Osteoclastic Activity, Osteocytic Osteolysis, and Osteoblastic Cell Cycle Inhibition by CDKN1a/p21

A 15-day spaceflight study in mice reveals that microgravity causes rapid bone loss through three distinct mechanisms: increased bone resorption by osteoclasts, active bone degradation by osteocytes (osteocytic osteolysis), and inhibition of new bone formation via p21-mediated cell cycle arrest in osteoblasts. These findings identify novel targets for countermeasures against bone loss on long-duration missions.

A Single Amino Acid Acts as a 'Clasp Knife Spring' Controlling Bacterial Pressure-Relief Channels

By creating hybrid channels from E. coli and S. aureus, researchers identified a single amino acid at the protein-lipid interface that controls how bacterial mechanosensitive channels (MscL) respond to pressure. This 'molecular spring' dictates both the sensitivity and duration of the channel's opening, providing a fundamental insight into how cells sense mechanical forces.

Microbial Emergency Release Valves: How Bacteria Survive Osmotic Shock

This review details the function of two critical protein families, MscS and MscL, which act as mechanosensitive channels to protect microbes from bursting under sudden osmotic stress. These channels serve as 'emergency release valves,' a fundamental survival mechanism with significant implications for controlling microbial life in space environments.

Mapping the Dynamic Interactions of a Bacterial Pressure-Relief Channel

Using disulfide trapping and electrophysiology in E. coli, this study maps the dynamic interactions within the MscL mechanosensitive channel. The findings reveal how specific protein domains move during channel opening, either locking it closed or stabilizing partially open states, providing a detailed model for how cells regulate internal pressure.

Engineering a Bacterial Channel into a Tunable Nanovalve for Biosensor and Drug Delivery Applications

Researchers demonstrated three distinct, reversible methods to control the pore size of the bacterial MscL channel, effectively turning it into a tunable nanovalve. By genetically modifying a key structural linker, they could precisely reduce ion flow, a finding with major implications for developing on-demand drug delivery systems and advanced biosensors for space missions.

In Vivo Analysis Reveals Bacterial Mechanosensitive Channels are Pentamers, Correcting Crystallography Artifacts

This study resolves a key controversy about the structure of the mechanosensitive channel MscL, a protein vital for cellular pressure regulation. Using an in vivo disulfide-trapping technique, researchers demonstrated that the channel is a pentamer in its native membrane, and that the previously reported tetrameric structure was an artifact of detergent use during crystallization.

Engineering a Biological Nanovalve: Charge Manipulation Controls Permeation in the MscL Channel

This study demonstrates that introducing electrical charges into the pore of the bacterial MscL channel not only gates it but also selectively controls the passage of large charged molecules. This finding is critical for developing triggerable nanovalves for targeted drug delivery, with potential applications in delivering medical countermeasures during space missions.

S. aureus MscL Is a Pentamer In Vivo but of Variable Stoichiometries In Vitro: Implications for Detergent-Solubilized Membrane Proteins

This study resolves a structural controversy by demonstrating that the bacterial mechanosensitive channel SaMscL is a five-subunit (pentameric) complex in its native cell membrane. It reveals that the four-subunit (tetrameric) structure previously reported was an artifact induced by the specific detergent used for in vitro analysis, highlighting a critical methodological pitfall for membrane protein research.