Microbiology Research

Understand microbial behavior, pathogen responses, and bacterial adaptations in space environments and closed ecosystems.

35 Publications
NASA Repository

More Microbiology Publications

34 publications

Nuclear Architecture Shapes DNA Damage from Cosmic Radiation

Re-analysis of radiation exposure data reveals that heavy ions like 56Fe cause persistent epigenetic changes (DNA methylation), while others cause transient effects. The 3D structure of chromatin within the cell nucleus significantly influences this damage, with outer layers acting as a partial shield and active gene regions being most vulnerable.

The Evolution of Temperature and Desiccation-Related Protein Families in Tardigrada Reveals a Complex Acquisition of Extremotolerance

Genomic analysis of tardigrades reveals their legendary resilience to extreme environments is not from a single source, but a complex mosaic of ancient, vertically inherited genes and key DNA repair proteins acquired from bacteria via horizontal gene transfer. This nuanced view of extremotolerance evolution provides critical insights for astrobiology and biotechnology.

Machine Learning Uncovers Hidden Antimicrobial Resistance Threats on the International Space Station

A deep learning analysis of the ISS microbiome identified previously concealed antimicrobial resistance (AMR) genes in bacteria, including potential pathogens like Enterobacter bugandensis and Bacillus cereus. The findings, validated experimentally, highlight the power of AI for monitoring microbial threats to astronaut health on long-duration missions.

Tardigrade Survival Secrets: Unraveling the Role of Antioxidants in Desiccation Tolerance

This study demonstrates that desiccation significantly increases harmful reactive oxygen species (ROS) in tardigrades. Using RNA interference, researchers identified that the antioxidant enzyme glutathione peroxidase is essential for survival, while other enzymes and aquaporin proteins are crucial for successful rehydration, highlighting a complex, synergistic defense mechanism.

Reanalysis of the Mars500 experiment reveals common gut microbiome alterations in astronauts induced by long-duration confinement

A reanalysis of the 520-day Mars500 isolation experiment identified significant, common changes in the crew's gut microbiome. The study found a depletion of key anti-inflammatory bacteria, which correlates with observed physiological symptoms of intestinal inflammation and metabolic disruption, highlighting a critical health risk for long-duration space missions.

Spaceflight Increases the Virulence of the Opportunistic Pathogen Serratia marcescens

Bacteria grown on the International Space Station were significantly more lethal to fruit flies than Earth-based controls. This study reveals that spaceflight induces temporary, reversible changes in the pathogen *Serratia marcescens*, increasing its growth rate and virulence, posing a heightened health risk for astronauts on long-duration missions.

NADPH Oxidase Activity is Required for ER Stress Survival in Plants

A study on Arabidopsis thaliana reveals that unlike in animals, reactive oxygen species (ROS) produced by NADPH oxidases (RBOHD/RBOHF) during cellular stress are protective. This pro-survival role is crucial for plant resilience, a key finding for developing robust crops for long-duration space missions.

ERULUS Receptor Kinase Regulates Plant Root Hair Growth by Controlling Calcium Oscillations at the Plasma Membrane

This study clarifies the function of the ERULUS (ERU) protein in Arabidopsis root hairs, showing it localizes to the plasma membrane, not the vacuole as previously thought. ERU is essential for maintaining the precise frequency and amplitude of calcium oscillations required for proper tip growth, a key process for plant nutrient uptake in both terrestrial and space environments.

On-Orbit Gene Expression Analysis: Validation of the WetLab-2 System on the ISS

NASA's WetLab-2 system successfully demonstrated on-orbit RNA isolation and real-time gene expression analysis (RT-qPCR) from bacterial and mammalian samples. Despite initial data noise from microgravity-induced bubbles, which was later resolved, the system provides a foundational capability for rapid molecular diagnostics and iterative science on long-duration space missions.

TNO1 Protein Identified as a Key Regulator of Root Guidance and Growth in Arabidopsis

A ground-based study on Arabidopsis thaliana reveals that the TNO1 protein, involved in intracellular trafficking, acts as a negative regulator of root skewing. The absence of TNO1 enhances root twisting and directional growth, highlighting a critical link between vesicle transport, cytoskeletal dynamics, and plant navigation, with implications for crop cultivation in space.

Maintaining the Factory: The Roles of the Unfolded Protein Response in Cellular Homeostasis in Plants

This review details the Unfolded Protein Response (UPR), a critical cellular signaling network that helps plants manage protein misfolding caused by environmental stress. It highlights the roles of master regulators like IRE1 and bZIP transcription factors, providing a framework for enhancing crop resilience on Earth and for life support systems in space.

Revisiting Horizontal Gene Transfer in the Tardigrade Genome: A Response to Scientific Controversy

Following criticism of their initial claim of extensive horizontal gene transfer (HGT) in tardigrades, the authors re-analyzed multiple independent genome assemblies. They conclude that while the level of HGT is lower than first reported, it remains substantially elevated (3-7%) compared to other animals, suggesting HGT is a real and significant feature of the tardigrade genome.

HLB1: A Plant-Specific Protein Linking Cytoskeleton to Cellular Trafficking in Arabidopsis

A forward-genetic screen in Arabidopsis identified a novel, plant-specific protein, HLB1, that localizes to the trans-Golgi network/early endosome (TGN/EE). HLB1 links this critical cellular sorting station to the actin cytoskeleton, playing a key role in protein recycling to the cell surface, a process vital for plant growth and environmental response.

Genetic Control of Chloroplast Size: The Role of the REC Gene Family in Arabidopsis

This study identifies a new gene family, REDUCED CHLOROPLAST COVERAGE (REC), in Arabidopsis thaliana that regulates the total size of the chloroplast compartment within a cell. The key protein, REC1, operates from the cytosol and nucleus, suggesting an external control mechanism that could be manipulated to enhance photosynthetic efficiency, a crucial factor for life support systems in space.

Evidence for Extensive Horizontal Gene Transfer from the Draft Genome of a Tardigrade

A 2015 genomic analysis of the tardigrade *Hypsibius dujardini* initially proposed that nearly 17.5% of its genes were acquired from other organisms through horizontal gene transfer (HGT), suggesting a novel mechanism for its extreme resilience. This landmark finding proved highly controversial and was later largely attributed by the scientific community to unaccounted-for bacterial contamination, sparking a critical debate on genomic analysis methods.

Unfolded Protein Response in Plants: A Review of Stress Signaling and Knowledge Gaps

This review synthesizes current knowledge on the plant Unfolded Protein Response (UPR), a critical cellular mechanism for managing endoplasmic reticulum stress. It highlights the roles of key sensors like IRE1 and bZIP transcription factors, comparing them to animal systems and identifying unique plant-specific pathways crucial for developing stress-resilient crops for space missions.

Vesicles versus Tubes: A Scientific Controversy in Plant ER-Golgi Transport

This review consolidates divergent expert opinions on how plant cells transport proteins between the Endoplasmic Reticulum (ER) and Golgi apparatus. It highlights a major scientific controversy, contrasting the classical vesicle-based model with evidence for direct tubular connections, and concludes that the mechanism remains unresolved.

Galactose-Depleted Xyloglucan Is Dysfunctional and Leads to Dwarfism in Arabidopsis

This study on Arabidopsis reveals that altering the structure of the cell wall polysaccharide xyloglucan by depleting galactose makes it dysfunctional, causing severe dwarfism. The research shows that the presence of this dysfunctional component is more detrimental than its complete absence, highlighting the critical role of specific sugar side chains for proper plant growth and development.

Endoplasmic Reticulum: A Central Hub for Plant Stress Sensing and Response

This review synthesizes current knowledge on the plant endoplasmic reticulum (ER), highlighting its critical role as a sensor and mediator of cellular stress. By managing protein quality, initiating signaling pathways, and influencing cell fate, the ER is fundamental to plant adaptation, with major implications for developing resilient crops for space missions.

HZE Radiation Triggers a Unique Dual Stress Response in Plants, Combining DNA Damage and General Stress Pathways

A study on Arabidopsis thaliana reveals that high-energy HZE radiation, a key risk in deep space, elicits a unique transcriptional response. Unlike gamma rays, HZE not only activates core DNA double-strand break (DSB) repair genes but also triggers a broad, systemic stress response similar to heat and wounding, providing critical insights for protecting future space-based agriculture.

A Two-Way Street: How Cellular Stress and Growth Hormones Regulate Each Other in Plants

Research in Arabidopsis thaliana reveals a critical two-way link between the Unfolded Protein Response (UPR), a key cellular stress pathway, and the growth hormone auxin. ER stress was found to suppress auxin signaling, while ER-based auxin transport is essential for a full UPR, uncovering a novel mechanism plants use to balance growth with stress adaptation.

IRE1: A Master Regulator of Cellular Stress and Cell Fate

This review synthesizes research on the IRE1 protein, a critical sensor in the cell's Endoplasmic Reticulum (ER). It reveals IRE1's dual role, acting as a switch that either promotes cell survival under mild stress or actively triggers cell death when stress is severe, a finding with major implications for astronaut health in space.

Organization of the ER–Golgi interface for membrane traffic control

This review compares the organization of the ER-Golgi transport system in different eukaryotes, focusing on mammalian and plant cells. It highlights how the conserved COPI and COPII trafficking machinery is adapted to meet diverse cellular demands, such as transporting large cargo in mammals versus supporting mobile Golgi units in plants, providing insights into the fundamental control of the secretory pathway.

A Single Amino Acid Acts as a 'Clasp Knife Spring' Controlling Bacterial Pressure-Relief Channels

By creating hybrid channels from E. coli and S. aureus, researchers identified a single amino acid at the protein-lipid interface that controls how bacterial mechanosensitive channels (MscL) respond to pressure. This 'molecular spring' dictates both the sensitivity and duration of the channel's opening, providing a fundamental insight into how cells sense mechanical forces.

Microbial Emergency Release Valves: How Bacteria Survive Osmotic Shock

This review details the function of two critical protein families, MscS and MscL, which act as mechanosensitive channels to protect microbes from bursting under sudden osmotic stress. These channels serve as 'emergency release valves,' a fundamental survival mechanism with significant implications for controlling microbial life in space environments.

Mapping the Dynamic Interactions of a Bacterial Pressure-Relief Channel

Using disulfide trapping and electrophysiology in E. coli, this study maps the dynamic interactions within the MscL mechanosensitive channel. The findings reveal how specific protein domains move during channel opening, either locking it closed or stabilizing partially open states, providing a detailed model for how cells regulate internal pressure.

Engineering a Bacterial Channel into a Tunable Nanovalve for Biosensor and Drug Delivery Applications

Researchers demonstrated three distinct, reversible methods to control the pore size of the bacterial MscL channel, effectively turning it into a tunable nanovalve. By genetically modifying a key structural linker, they could precisely reduce ion flow, a finding with major implications for developing on-demand drug delivery systems and advanced biosensors for space missions.

In Vivo Analysis Reveals Bacterial Mechanosensitive Channels are Pentamers, Correcting Crystallography Artifacts

This study resolves a key controversy about the structure of the mechanosensitive channel MscL, a protein vital for cellular pressure regulation. Using an in vivo disulfide-trapping technique, researchers demonstrated that the channel is a pentamer in its native membrane, and that the previously reported tetrameric structure was an artifact of detergent use during crystallization.

TNO1 Protein Plays a Key Role in Plant Salt Tolerance and Intracellular Trafficking

A NASA-funded study in Arabidopsis identifies a novel protein, TNO1, as a critical component for proper intracellular protein transport and tolerance to salt and osmotic stress. The findings reveal a key link between the cell's trafficking machinery and its ability to withstand environmental challenges, offering new targets for engineering resilient crops for space missions.

Engineering a Biological Nanovalve: Charge Manipulation Controls Permeation in the MscL Channel

This study demonstrates that introducing electrical charges into the pore of the bacterial MscL channel not only gates it but also selectively controls the passage of large charged molecules. This finding is critical for developing triggerable nanovalves for targeted drug delivery, with potential applications in delivering medical countermeasures during space missions.

S. aureus MscL Is a Pentamer In Vivo but of Variable Stoichiometries In Vitro: Implications for Detergent-Solubilized Membrane Proteins

This study resolves a structural controversy by demonstrating that the bacterial mechanosensitive channel SaMscL is a five-subunit (pentameric) complex in its native cell membrane. It reveals that the four-subunit (tetrameric) structure previously reported was an artifact induced by the specific detergent used for in vitro analysis, highlighting a critical methodological pitfall for membrane protein research.

Unconventional Nuclear-Cytoskeletal Linking by Spag4 and Yuri Gagarin is Essential for Male Fertility

A study in Drosophila reveals that the SUN protein Spag4 is critical for male fertility by anchoring the sperm tail's basal body to the nucleus. This process unexpectedly relies on the coiled-coil protein Yuri Gagarin, not a traditional KASH partner, defining a novel pathway essential for sperm development and cellular architecture.